Heterogeneity of neuroblastoma cell identity defined by transcriptional circuitries
Valentina Boeva
,
Caroline Louis-Brennetot
,
Agathe Peltier
,
Simon Durand
,
Cecile Pierre-Eugene
,
et al.
Article dans une revue
hal-01741718v1
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The Kendall and Mallows Kernels for Permutations
Yunlong Jiao
,
Jean-Philippe Vert
Article dans une revue
hal-01679012v1
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The CoLoMoTo Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks
Aurélien Naldi
,
Céline Hernandez
,
Nicolas Levy
,
Gautier Stoll
,
Pedro Monteiro
,
et al.
Article dans une revue
hal-01794294v2
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Impaired PRC2 activity promotes transcriptional instability and favors breast tumorigenesis
Michel Adam Wassef
,
Verónica Rodilla
,
Aurélie Teissandier
,
Bruno Zeitouni
,
Nadège Gruel
,
et al.
Article dans une revue
hal-02559123v1
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Classification of gene signatures for their information value and functional redundancy
Laura Cantini
,
Laurence Calzone
,
Loredana Martignetti
,
Mattias Rydenfelt
,
Nils Blüthgen
,
et al.
Article dans une revue
hal-02129604v1
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A general and flexible method for signal extraction from single-cell RNA-seq data
Davide Risso
,
Fanny Perraudeau
,
Svetlana Gribkova
,
Sandrine Dudoit
,
Jean-Philippe Vert
Nature Communications , 2018, 9 (1)
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hal-01985432v1
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Changes in genome organization of parasite-specific gene families during the Plasmodium transmission stages
Evelien Bunnik
,
Kate Cook
,
Nelle Varoquaux
,
Gayani Batugedara
,
Jacques Prudhomme
,
et al.
Nature Communications , 2018, 9 (1)
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hal-01985437v1
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The French Early Breast Cancer Cohort (FRESH): A Resource for Breast Cancer Research and Evaluations of Oncology Practices Based on the French National Healthcare System Database (SNDS)
Elise Dumas
,
Lucie Laot
,
Florence Coussy
,
Beatriz Grandal Rejo
,
Eric Daoud
,
et al.
Article dans une revue
hal-03901737v1
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Learning Sparse Penalties for Change-Point Detection using Max Margin Interval Regression
Guillem Rigaill
,
Toby Dylan Hocking
,
Francis Bach
,
Jean-Philippe Vert
ICML 2013 - 30 th International Conference on Machine Learning , Supported by the International Machine Learning Society (IMLS), Jun 2013, Atlanta, United States
Communication dans un congrès
hal-00824075v1
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Supervised Quantile Normalisation
Marine Le Morvan
,
Jean-Philippe Vert
2017
Pré-publication, Document de travail
hal-01525306v1
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On learning matrices with orthogonal columns or disjoint supports
Kevin Vervier
,
Pierre Mahé
,
Alexandre d'Aspremont
,
Jean-Baptiste Veyrieras
,
Jean-Philippe Vert
Communication dans un congrès
hal-01101875v1
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Global alignment of protein-protein interaction networks by graph matching methods.
Mikhail Zaslavskiy
,
Francis Bach
,
Jean-Philippe Vert
Article dans une revue
hal-00382501v1
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Learning smoothing models of copy number profiles using breakpoint annotations
Toby Dylan Hocking
,
Gudrun Schleiermacher
,
Isabelle Janoueix-Lerosey
,
Olivier Delattre
,
Francis Bach
,
et al.
2012
Pré-publication, Document de travail
hal-00663790v1
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Intersecting singularities for multi-structured estimation
Emile Richard
,
Francis Bach
,
Jean-Philippe Vert
ICML 2013 - 30th International Conference on Machine Learning , Jun 2013, Atlanta, United States
Communication dans un congrès
hal-00918253v1
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SegAnnDB: interactive web-based genomic segmentation
Toby D. Hocking
,
Valentina Boeva
,
Guillem Rigaill
,
Gudrun Schleiermacher
,
Isabelle Janoueix-Lerosey
,
et al.
Article dans une revue
hal-01101868v1
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Clusterpath An Algorithm for Clustering using Convex Fusion Penalties
Toby Dylan Hocking
,
Armand Joulin
,
Francis Bach
,
Jean-Philippe Vert
28th international conference on machine learning , Jun 2011, United States. pp.1
Communication dans un congrès
hal-00591630v1
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A Dual Protein-mRNA Localization Screen Reveals Compartmentalized Translation and Widespread Co-translational RNA Targeting
Racha Chouaib
,
Adham Safieddine
,
Xavier Pichon
,
Arthur Imbert
,
Oh Sung Kwon
,
et al.
Article dans une revue
pasteur-02925687v1
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Group Lasso with Overlaps: the Latent Group Lasso approach
Guillaume Obozinski
,
Laurent Jacob
,
Jean-Philippe Vert
[Research Report] 2011, pp.60
Rapport
inria-00628498v1
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The Weighted Kendall and High-order Kernels for Permutations
Yunlong Jiao
,
Jean-Philippe Vert
35th International Conference on Machine Learning , Jul 2018, Stockholm, Sweden. pp.2314--2322
Communication dans un congrès
hal-01717385v1
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Setting the basis of best practices and standards for curation and annotation of logical models in biology—highlights of the [BC]2 2019 CoLoMoTo/SysMod Workshop
Anna Niarakis
,
Martin Kuiper
,
Marek Ostaszewski
,
Rahuman Malik Sheriff
,
Cristina Casals-Casas
,
et al.
Article dans une revue
hal-02549796v1
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Dynamical Boolean Modeling of Immunogenic Cell Death
Andrea Checcoli
,
Jonathan Pol
,
Aurelien Naldi
,
Vincent Noël
,
Emmanuel Barillot
,
et al.
Article dans une revue
hal-03050475v1
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Integrative Modelling of the Influence of MAPK Network on Cancer Cell Fate Decision
Luca Grieco
,
Laurence Calzone
,
Isabelle Bernard-Pierrot
,
François Radvanyi
,
Brigitte Kahn-Perlès
,
et al.
Article dans une revue
inserm-02152259v1
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Robust Seriation and Applications to Cancer Genomics
Antoine Recanati
,
Nicolas Servant
,
Jean-Philippe Vert
,
Alexandre d'Aspremont
2018
Pré-publication, Document de travail
hal-01851960v1
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On learning matrices with orthogonal columns or disjoint supports
Kevin Vervier
,
Pierre Mahé
,
Alexandre d'Aspremont
,
Jean-Baptiste Veyrieras
,
Jean-Philippe Vert
2014
Pré-publication, Document de travail
hal-00985654v2
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The intestinal microbiota interferes with the microRNA response upon oral Listeria infection.
Cristel Archambaud
,
Odile Sismeiro
,
Joern Toedling
,
Guillaume Soubigou
,
Christophe Bécavin
,
et al.
Article dans une revue
hal-01350904v1
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Highly dynamic and sex-specific expression of microRNAs during early ES cell differentiation.
Constance Ciaudo
,
Nicolas Servant
,
Valérie Cognat
,
Alexis Sarazin
,
Emmanuelle Kieffer
,
et al.
Article dans une revue
inserm-00438642v1
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Prediction of Mutations to Control Pathways Enabling Tumour Cell Invasion with the CoLoMoTo Interactive Notebook (Tutorial)
Nicolas Levy
,
Aurélien Naldi
,
Céline Hernandez
,
Gautier Stoll
,
Denis Thieffry
,
et al.
Article dans une revue
hal-01809081v1
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SegAnnot: an R package for fast segmentation of annotated piecewise constant signals
Toby Dylan Hocking
,
Guillem Rigaill
2012
Pré-publication, Document de travail
hal-00759129v1
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Human lymphoid organ cDC2 and macrophages play complementary roles in T follicular helper responses
Mélanie Durand
,
Thomas Walter
,
Tiphène Pirnay
,
Thomas Naessens
,
Paul Guéguen
,
et al.
Article dans une revue
hal-02440608v1
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A path following algorithm for the graph matching problem.
Mikhail Zaslavskiy
,
Francis Bach
,
Jean-Philippe Vert
Article dans une revue
hal-00433567v1
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