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authIdHal_s : laura-cantini
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Unsupervised Ground Metric Learning Using Wasserstein Singular Vectors

Geert-Jan Huizing , Laura Cantini , Gabriel Peyré
Proceedings of the 39th International Conference on Machine Learning,, Jul 2022, Baltimore, United States
Communication dans un congrès hal-03828733v1

Optimal transport improves cell–cell similarity inference in single-cell omics data

Geert-Jan Huizing , Gabriel Peyré , Laura Cantini
Article dans une revue hal-03623386v1
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Evaluating the Reproducibility of Single-Cell Gene Regulatory Network Inference Algorithms

Yoonjee Kang , Denis Thieffry , Laura Cantini
Frontiers in Genetics, 2021, 12, ⟨10.3389/fgene.2021.617282⟩
Article dans une revue hal-03358193v1

Classification of gene signatures for their information value and functional redundancy

Laura Cantini , Laurence Calzone , Loredana Martignetti , Mattias Rydenfelt , Nils Blüthgen , et al.
npj Systems Biology and Applications, 2018, 4 (1), ⟨10.1038/s41540-017-0038-8⟩
Article dans une revue hal-02129604v1
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An Integrated Analysis of miRNA and Gene Expression Changes in Response to an Obesogenic Diet to Explore the Impact of Transgenerational Supplementation with Omega 3 Fatty Acids

Karla Fabiola Corral-Jara , Laura Cantini , Nathalie Poupin , Tao Ye , Jean-Paul Rigaudière , et al.
Nutrients, 2020, 12 (12), pp.3864. ⟨10.3390/nu12123864⟩
Article dans une revue hal-03100700v1
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Benchmarking joint multi-omics dimensionality reduction approaches for cancer study

Laura Cantini , Pooya Zakeri , Céline Hernandez , Aurelien Naldi , Denis Thieffry , et al.
2020
Pré-publication, Document de travail hal-02998156v1
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Optimal transport improves cell–cell similarity inference in single-cell omics data

Geert-Jan Huizing , Gabriel Peyré , Laura Cantini
Bioinformatics, 2022, 38 (8), pp.2169-2177. ⟨10.1093/bioinformatics/btac084⟩
Article dans une revue hal-03828714v1
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Molecular Inverse Comorbidity between Alzheimer’s Disease and Lung Cancer: New Insights from Matrix Factorization

Alessandro Greco , Jon Sanchez Valle , Vera Pancaldi , Anaïs Baudot , Emmanuel Barillot , et al.
International Journal of Molecular Sciences, 2019, 20 (13), pp.3114. ⟨10.3390/ijms20133114⟩
Article dans une revue hal-02277045v2
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Benchmarking joint multi-omics dimensionality reduction approaches for the study of cancer

Laura Cantini , Pooya Zakeri , Céline Hernandez , Aurelien Naldi , Denis Thieffry , et al.
Nature Communications, 2021, 12, ⟨10.1038/s41467-020-20430-7⟩
Article dans une revue hal-03102088v1
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Paired single-cell multi-omics data integration with Mowgli

Geert-Jan Huizing , Ina Maria Deutschmann , Gabriel Peyré , Laura Cantini
Logiciel hal-04186802v1

Optimal Transport improves cell-cell similarity inference in single-cell omics data

Geert-Jan Huizing , Gabriel Peyré , Laura Cantini
Article dans une revue hal-03365157v1

Unsupervised Ground Metric Learning using Wasserstein Eigenvectors

Geert-Jan Huizing , Laura Cantini , Gabriel Peyré
Proceedings of the 39th International Conference on Machine Learning, Jul 2022, Baltimore, United States
Communication dans un congrès hal-03387865v1

Hope4Genes: a Hopfield-like class prediction algorithm for transcriptomic data

Laura Cantini , Michele Caselle
Scientific Reports, 2019, 9 (1), ⟨10.1038/s41598-018-36744-y⟩
Article dans une revue hal-02129598v1

Identification of microRNA clusters cooperatively acting on epithelial to mesenchymal transition in triple negative breast cancer

Laura Cantini , Gloria Bertoli , Claudia Cava , Thierry Dubois , Andrei Zinovyev , et al.
Nucleic Acids Research, 2019, 47 (5), pp.2205-2215. ⟨10.1093/nar/gkz016⟩
Article dans une revue hal-02129600v1
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Interpreting pathways to discover cancer driver genes with Moonlight

Antonio Colaprico , Catharina Olsen , Matthew Bailey , Gabriel Odom , Thilde Terkelsen , et al.
Nature Communications, 2020, 11 (1), ⟨10.1038/s41467-019-13803-0⟩
Article dans une revue hal-03001026v1
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Investigating the epi-miRNome: identification of epi-miRNAs using transfection experiments

Elisa Reale , Daniela Taverna , Laura Cantini , Loredana Martignetti , Matteo Osella , et al.
Epigenomics, 2019, 11 (14), pp.1581-1599. ⟨10.2217/epi-2019-0050⟩
Article dans une revue hal-03001049v1
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Independent Component Analysis for Unraveling the Complexity of Cancer Omics Datasets

Nicolas Sompairac , Petr V Nazarov , Urszula Czerwinska , Laura Cantini , Anne Biton , et al.
International Journal of Molecular Sciences, 2019, 20 (18), pp.4414. ⟨10.3390/ijms20184414⟩
Article dans une revue hal-02343412v1

Evaluating the reproducibility of single-cell gene regulatory network inference algorithms

Yoonjee Kang , Denis Thieffry , Laura Cantini
2020
Pré-publication, Document de travail hal-03000601v1
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Assessing reproducibility of matrix factorization methods in independent transcriptomes

Laura Cantini , Ulykbek Kairov , Aurélien de Reyniès , Emmanuel Barillot , François Radvanyi , et al.
Article dans une revue hal-02095317v1