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authIdHal_s : andrei-zinovyev
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The CoLoMoTo Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks

Aurélien Naldi , Céline Hernandez , Nicolas Levy , Gautier Stoll , Pedro Monteiro , et al.
Frontiers in Physiology, 2018, 9, pp.n°680:1-13. ⟨10.3389/fphys.2018.00680⟩
Article dans une revue hal-01794294v2

Classification of gene signatures for their information value and functional redundancy

Laura Cantini , Laurence Calzone , Loredana Martignetti , Mattias Rydenfelt , Nils Blüthgen , et al.
npj Systems Biology and Applications, 2018, 4 (1), ⟨10.1038/s41540-017-0038-8⟩
Article dans une revue hal-02129604v1
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Molecular Inverse Comorbidity between Alzheimer’s Disease and Lung Cancer: New Insights from Matrix Factorization

Alessandro Greco , Jon Sanchez Valle , Vera Pancaldi , Anaïs Baudot , Emmanuel Barillot , et al.
International Journal of Molecular Sciences, 2019, 20 (13), pp.3114. ⟨10.3390/ijms20133114⟩
Article dans une revue hal-02277045v2
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Prediction of Mutations to Control Pathways Enabling Tumour Cell Invasion with the CoLoMoTo Interactive Notebook (Tutorial)

Nicolas Levy , Aurélien Naldi , Céline Hernandez , Gautier Stoll , Denis Thieffry , et al.
Frontiers in Physiology, 2018, 9, pp.787. ⟨10.1101/319780⟩
Article dans une revue hal-01809081v1

Identification of microRNA clusters cooperatively acting on epithelial to mesenchymal transition in triple negative breast cancer

Laura Cantini , Gloria Bertoli , Claudia Cava , Thierry Dubois , Andrei Zinovyev , et al.
Nucleic Acids Research, 2019, 47 (5), pp.2205-2215. ⟨10.1093/nar/gkz016⟩
Article dans une revue hal-02129600v1
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Interpreting pathways to discover cancer driver genes with Moonlight

Antonio Colaprico , Catharina Olsen , Matthew Bailey , Gabriel Odom , Thilde Terkelsen , et al.
Nature Communications, 2020, 11 (1), ⟨10.1038/s41467-019-13803-0⟩
Article dans une revue hal-03001026v1
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Independent Component Analysis for Unraveling the Complexity of Cancer Omics Datasets

Nicolas Sompairac , Petr V Nazarov , Urszula Czerwinska , Laura Cantini , Anne Biton , et al.
International Journal of Molecular Sciences, 2019, 20 (18), pp.4414. ⟨10.3390/ijms20184414⟩
Article dans une revue hal-02343412v1
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Assessing reproducibility of matrix factorization methods in independent transcriptomes

Laura Cantini , Ulykbek Kairov , Aurélien de Reyniès , Emmanuel Barillot , François Radvanyi , et al.
Article dans une revue hal-02095317v1